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This would bring docker-galaxy-stable closer inline with planemo-machine.
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https://github.com/galaxyproject/galaxy/tree/dev/lib/galaxy/jobs
https://github.com/galaxyproject/galaxy/tree/dev/lib/galaxy/jobs/runners
https://github.com/galaxyproject/galaxy/compare/dev...jmchil…
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The upstream chart is now a version 2.4.1. We should update and test to see if we can remove the cvmfs fix in the galaxy-helm chart.
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@jmchilton any chance you could publish a new package to npm. And maybe we could move the package to the galaxyproject npm organization (https://www.npmjs.com/org/galaxyproject) ?
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I don't think --miniprot should be a binary parameter or described as output:
https://github.com/galaxyproject/tools-iuc/blob/b21f516390fcbbe3c098266ff0d72e64924aab00/tools/busco/busco.xml#L114
Fr…
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- program launch: https://www.software.ac.uk/blog/2019-11-22-supercharge-your-open-project-leadership-training
- on mentoring: https://www.software.ac.uk/blog/2020-10-09-key-skills-know-mentoring
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The problem is https://github.com/galaxyproteomics/tools-galaxyp/blob/master/tools/maxquant/macros.xml#L156C23-L156C41, it's not valid to do any file IO in the templating section, as a general princip…
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Just working on a role/task to add files from file system to a library (using https://github.com/galaxyproject/galaxy/blob/dev/scripts/api/library_upload_dir.py). Was wondering if it is an idea to int…
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Sentry Issue: [GALAXY-MAIN-YAW](https://sentry.galaxyproject.org/organizations/galaxy/issues/152640/?referrer=github_integration)
```
TypeError: Cannot read properties of undefined (reading 'name')
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Relocated from https://github.com/galaxyproject/usegalaxy-tools/issues/649
Many users have reported problems with some of the indexes (not all are a problem, just some). Suspect a path problem or c…