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When I was testing h5_read_fuzzer with libfuzzer, I found a memory leak .
The cause of this vulnerability is: H5F__accum_write calls H5FL_blk_malloc to apply for memory, and after a series of opera…
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PETSc cannot build with `+hdf5` due to requiring it built with mpi. Serac set `hdf5~mpi` a long time ago, so it may not be an issue anymore. This would in turn allow LiDO to build `petsc+hdf5` as well…
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When I opened the hdf5 results in h5 folder with Paraview, it gave me these messages below. How can I do next? Thank you very much!
ERROR: In vtkVisItChomboReader.cxx, line 135
vtkVisItChomboReader…
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I get this precompilation error:
```
julia> err
PkgPrecompileError: The following 7 direct dependencies failed to precompile:
FinEtoolsHeatDiff [972d1c22-8bdd-11e9-11cf-cdcb7577b041]
Failed t…
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Eddymotion uses large datasets and continuously needs to update them in memory, keep a large list of transforms, etc.
For that reason, we created the DWI object (which we are now generalizing so th…
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I am trying to save a `TimeSeries` as HDF5 but am getting a `ValueError` (see stack trace). The file gets written to the correct directory, but when trying to read it, I get the similar error `ValueEr…
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https://www.neonscience.org/resources/learning-hub/tutorials/about-hdf5
Example of file from: https://ic.bbp.epfl.ch/icproject
[rCell23970.nwb.zip](https://github.com/cheminfo/hdf5/files/1011335…
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I am trying to compile Trilinos on OLCF's summit. I have the following in my configure file. Specifically I need Thyra_AztecOOLinearOpWithSolveFactory.hpp header file to compile my Trilinos based code…
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- [ ] Decide if we want to keep using our custom waveform compressors or just an HDF5 filter (e.g. GZIP)
- [ ] Decide on the HDF5 filter for the higher tiers: GZIP is old and slow, can we use SZIP (b…
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We are using a Leica Confocal Microscope to measure FCS. The Leica Application Suite gives us a .pt3 file, but unfortunately with the time format "dd-mm-yy" which is why we get the following error:
…