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Hi,
After I got help from @dariober , I finally runned cnv_facets sucessfully.Appreciate! The output included a plot. I have several questions:
why was the purity value NA in all of my sample? the…
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### Data Owner Name
National Library of Medicine (NLM)
### Data Owner Country/Region
United States
### Data Owner Industry
Resources, Agriculture & Fisheries
### Website
https://www.ncbi.nlm.ni…
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Here is an outline of a workflow that needs to be enabled in Galaxy to allow variant calling on HIV-1 datasets
- [ ] Upload all datasets for `PRJNA517147`
- [ ] QC with `fastqc` and `multiqc`
…
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Hi,
After I got help from @dariober , I finally runned cnv_facets sucessfully.Appreciate! The output included a plot. I have several questions:
1. why was the purity value NA in all of my sample? t…
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editor preferred term: Clone-seq
textual definition: A massively-parallel site-directed mutagenesis approach leveraging next-generation sequencing to rapidly and cost-effectively generate a large num…
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Dear professor,
thansk for such a accurate software.
when I am using it, it raise errors like follows. MAYbe caused by chrM and chrMT.
what is more, since your genome.dict has many patch chr…
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I've been making my own copy of the data via the /export endpoint.
Unless I'm missing something, I don't think there's a good way for me to verify that my copy is complete - not just for auditing p…
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https://doi.org/10.1101/103374
> Translation initiation is a key step in the regulation of gene expression. In addition to the annotated translation initiation sites (TISs), the translation process…
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Use cases:
- Storage (long-term)
- Storage (short-term)
- Streaming
- Random access
- By class
- By genomic range
Metrics:
- Compression ratio
- Compression speed
- Decompression speed…
voges updated
3 years ago
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We could use some way to index reads so that we can go from a k-mer to all reads that contain it.
Here are a few references courtesy of a Twitter conversation with @rchikhi:
[Parallel and memory-eff…