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It would be more logical, with respect to the timeline of events in reality, to update VMMC after HIV testing so that people about to undergo VMMC are tested first. This way we can rely on testing and…
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The BHIS does not seem to capture the time of birth. This report requires that we know the time of birth to determine the timeliness of the treatment.
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Hello VStrains team, thank you for developing such a great tool, but while using it, I faced the following problem.
I attempted to assemble the complete HIV genome from this sample: [SRR29407826](htt…
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It's a bit confusing that users pass in modules in `pars.diseases.hiv`, but during `Sim` initialization, the modules are all popped from the `pars` dict and then added back to the pars via `Module.ini…
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**Is your feature request related to a problem? Please describe.**
getCandidateCodes is fantastic at finding codes from different strings, but some vocabularies like SNOMED have very powerful horizon…
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When deploying for the first time, the target user doesn't know about the foreign repository's host name, and this will bail out unless you get it added to `known_hosts` manually. For example:
```b…
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**THIS IS FROM THE ORIGINAL ANALYSIS. FOR UPDATED SCENARIOS/REVISIONS TO SCRIPTS, SEE COMMENT BELOW**
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Scenarios
- Historical (up to 2020):
- baseline screening with cytology age age 35 up t…
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Hi,
I would like to use your curated dataset for further neutralizability prediction.
- processing/hiv_reg/dataset_hiv_reg.xlsx
- processing/hiv_cls/dataset_hiv_cls.xlsx
- processing/cov_cls/dat…
sj584 updated
6 months ago
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## Expected vs. Actual
**Expected**: The PDF download should have the appropriate authorizations specified, based on the user's input in the Appoint experience.
**Actual**: The PDF download doesn't s…
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Following our discussion with @nekrut , I am creating an issue to outline essential components for creating a barebones HIV (or other short RNA virus) genomic analysis pipeline.
Key steps for ampl…