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@celinescornavacca I've read the part in your book about hardwired/softwired clusters in rooted phylogenetic networks. Now I understand what these are:
- A _cluster_ induced by an edge is the set of …
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The consensus trees generated by MrBayes often contain multifurcations. If the user passes a multifurcating tree as an input, mPTP prints "Tree is neither unrooted nor rooted. Go fix your tree." on th…
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Test `mptp` with the new GCC 5 compiler that is becoming the new standard.
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The current results CSV header consists of:
name | n_taxa | n_trees | n_reticulations | msa_size | sampling_type | simulation_type | likelihood_type | timeout | n_random_start_networks | n_parsimon…
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This example network shows that the displayed trees of a network can have identical topology:
![3](https://user-images.githubusercontent.com/1059869/102503598-2d9a2380-4080-11eb-8dfe-ac5ed3d2a6e7.png…
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### Name
PyPSA
### Screenshots
![pypsa_logo](https://user-images.githubusercontent.com/61968949/139744919-3310e71c-20b2-44fb-8822-cb25e95871d3.png)
![elec_s_X](https://user-images.githubus…
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Dear CSSE team,
Our team at [ourworldindata.org](https://ourworldindata.org/coronavirus-data-explorer) has recently switched to JHU data for its data on confirmed cases and deaths. We're very grate…
edomt updated
3 years ago
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RAxML-NG gives:
`WARNING: Best ML tree contains 2 near-zero branches!
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The sequences were simulated with Seq-Gen using
`cmd = 'seq-gen -mHKY -t3.0 -f0.3,0.2,0.2,0.3 -l' + str(dataset.msa_size)+…
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In the whiteboard meeting today, we discovered some challenges with the current network topology search algorithm.
- The arc insertion move neighborhood is way too large. Also, ideally one would al…