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Hi,
I ran `ruby -I preprocess_stage1.rb`and it's taking more than 2 hrs. only for 6 samples (LIDC-IDRI-0001 to LIDC-IDRI-0006]. Could you tell me how much it should take to finish the jon on the wh…
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Hello Sir Michael, it is almost 48 hours since I start converting LIDC-IDRI datasets (1010 patients) into nrrd (nifty) file before preprocessed again into numpy by `preprocessing.py` at `medicaldetect…
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It looks like you have done some additional preprocessing on the LIDC dataset prior to running preprocessing.py, such as saving the data to a different format from the original DICOM files and making …
Riksi updated
5 years ago
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Hello Sir Paul, after modifying lidc data loader, configs, and preprocessing code for my custom Lung CT scan private datasets with 3 classification classes (solid, subsolid, groundglass),
I have pro…
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Hello Sir @MiGoetz, thank you for your marvelous work
Does this code is support conversion of DICOM file to NRRD which doesn't have XML?
I have many scattered DICOM files (in folders) without DICOM …
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## 🐛 Bug
Hi I'm running `preprocess_stage2.lua` code [https://github.com/anibali/lidc-idri-preprocessing/tree/master/stage2](url). But getting below error
```
lua: Trying to resize storage th…
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Hi,
I met an error like following while testing after training with 4ch dataset.
I think I need to change something in testing code, but I don't know exactly. I guess it's due to mismatch between 4…
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Related to my previous question, I found out that .dcm files made with Toshiba scanners contain a lot of negative pixel values. Here you can find a histogram of the pixel values for one of the cases i…
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Hello, in det2cls.py file, what is the file resmodelpath = './detcls-'+ STR (fold)+' old/ ckptgbit.t7 '?
I don't show this file here, but when I run the det2cls.py file, it always shows that the fi…
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Related to #229 : While the nodule classification works for providing nodule locations with small values in each dimension, it fails when I tried to classify a real nodule (first one of patient LIDC-I…