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Hallo Markus,
Found a bug in lin-bus.cpp.
See https://forum.pjrc.com/index.php?threads/lin-bus-2-1-working-example.74448/post-339650.
And the solution: https://forum.pjrc.com/index.php?threads/lin-…
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Hi, Thanks for the code upload. I'm running this in conda, and keep running into this issue with reading in the mz values and the tolerance values. What were the configurations used to convert your ra…
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Definition of “Article” should cover the various forms reflected in the data (e.g. academic journals, journalism, adverts, etc.)
Here is the scrape of all instances of "article" with in `mods:genre…
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Susan and Kim discussed the use of LDF by LINCS with the ontology group (including Deb and Joel). They asked if @smurp could please provide a detailed scoping of what HuViz would require from LDF so t…
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Here I trained a model on all data available from batch 1 in the LINCS dataset, which can be found like this: `aws s3 ls s3://cellpainting-gallery/cpg0004-lincs/broad/workspace/backend/2016_04_01_a549…
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Hi,
when I run following step
```
library('Asgard')
library('Seurat')
GSE92742.gctx.path="GSE92742_Broad_LINCS_Level5_COMPZ.MODZ_n473647x12328.gctx"
GSE70138.gctx.path="GSE70138_Broad_LINCS…
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Though https://info.cfde.cloud/info/standards/C2M2 has a lot of information; someone who is completely clueless about the C2M2 will not be able to assemble a C2M2 data package with the provided inform…
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LINCS contains 6 dose points: 0.04 µM, 0.12 µM, 0.37 µM, 1.11 µM, 3.33 µM, and 10 µM. For my experiments, I will use the highest dose (10 µM) as the training set and the validation set. The model is t…
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I am trying to plot some genes using data level 4 for my compound (BRD-K55591206) on HepG2 cells.
There are two signatures with HepG2 cells at level 5:
LJP008_HEPG2_24H:J01
POL001_HEPG2_24H:J09
…