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Hi Yuke, thanks for your excellent work!
I have a question about the selection of `ngs` parameter. In the Section 6 of the paper, I only find some constrains for the `ngs`without direct formula. I…
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As the title, an error was happened when I run "CellNeighborEX.categorization.generate_input_files(data_type="NGS", df=df_processed, sample_size=30, min_sample_size=1)" on SSliver dataset
THZ34 updated
3 months ago
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KPIC nights use NIRC2 as the selected instrument and the guider is k2acama. Prior to 2024B, KPIC was on the schedule as NIRSPAO+NIRC2-NGS and the NIRC2 program was identified to populate PROGID and a…
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old pipeliner code: https://github.com/CCBR/Pipeliner/blob/86c6ccaa3d58381a0ffd696bbf9c047e4f991f9e/Rules/InitialChIPseqQC.snakefile#L867-L921
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Hello :)
I have a question regarding viral-ngs and its capabilities for detecting virus integration and outputting the results to a text file. I tried to understand the explanation provided in the …
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hi，how to resolve this problem ？
----------------------------------------
Writing to output...
Primers combination number 1
Number of written amplicons: 272
Sorting amplicons to multiplexes 1_2 (…
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Hi,
I'm having issues trying to run SigProfiler for CNV data using custom CNV calls. We have an in-house pipeline for CNV calls that is similar to the ASCAT approach, tailored to our WGS data. I t…
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@k-florek @fanninpm @erinyoung @tives82 @DrB-S
I have been using Cecret for all things SARS-CoV-2 and our research lab just started to work up a NGS methodology for Human Norovirus sequen…
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```
stream_sra.py -a SRR1616919 -M 10 head.1.fq head.2.fq
Traceback (most recent call last):
File "/panfs/pan1.be-md.ncbi.nlm.nih.gov/product_manager_research_projects/chipo/ultraenv/bin/strea…
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Hi, Are you planning to add support to wings ngs embroidery format? if it is not in the plan, I would be up to contribute on this with some guidance, thanks!