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Hi, I found a mismatch between an overlay and a standard image when the voxel number is even in the overlay. More specifically, the visualisation is shifted by half voxel when compared to FSLeyes or o…
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Hello @ajoshiusc
As discussed, I'm testing with new subjects,
however the pipeline crashs bath the end
here is the error
```
Saving output files...
Finished transformation. Saved fi…
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Just reporting it, because I cannot immediately explain it to myself:
`@graph.records.prov:Entity` contains records on parameter estimate maps like:
```json
{
"@id": "htt…
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Hi mrDiffusion experts,
We used following command lines to preprocess DTI data:
dwParams = dtiInitParams('clobber',1,'phaseEncodeDir',2);
dtiInit('path to DTI nifti','path to T1.nii.gz',dwParams);
…
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Build one generic script that will convert from dicom to nifti (nii.gz) with generic names and put in relevant folders (according to BIDS)
BIDS website: https://bids.neuroimaging.io/
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Hello , I tried to execute the pipeline when this error appeared
```
# Processing The Data
# Removing Neck
# Registration to template
# Swapping Dimensions
fslhd "/tmp/RtmpCrjobf/file14ba…
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**Describe the bug**
The functions `ants.to_nibabel(ants_img)` and `ants.from_nibabel(nib_img)` appear to be missing from the 0.5.3 release. Have they been removed intentionally?
**To reprod…
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### Description
Out of 48 possible orientations for a 3d image, the 24 left-handed orientations are treated incorrectly when saving a multi-frame dicom file or series.
- Examples for rig…
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Hi,
Looks like `pydicom` is looking for `LossyImageCompressionRatio` attribute when using MOOSE segmentation as input.
I am using nifti2dicom 1.1.3 with [patched sms 3D](https://github.com/LalithS…
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**Describe the bug**
`mas_masking_batch` fails to find the header of the *.affine.nii.gz files. The files can be visualized correctly in fsleyes and I can access the header when opened in python usin…