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I'm trying to find out how to map these features back to the percolator:
![percolator_features](https://user-images.githubusercontent.com/45520179/218236761-58d3f9ea-3129-4363-a658-eb11dce2ed74.png)
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### Description of feature
This issue is to control some important tasks that should be done in OpenMS core related to the current pipeline:
- [x] Support for common enzymes (commonly found in da…
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One of the benchmarks done in the Percolator paper show that larger crawl rates (changes to 40% or more of the repository) are better for mapreduce indexing and less than 40% is better for Percolator.…
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Hello,
I did a little testing of v3.07 and I am running into occasional segmentation faults when enabling the RESET algorithm. They seem to be associated with PIN files with low target/decoy ratios…
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Hi, I tried to run `crux percolator` with the option `--pepxml-output T` and got this error:
```
FATAL: An exception occurred: 'n' is not a valid amino acid
```
I use crux version `3.2-dcf56a2…
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Hi, Im kind of interested in trying out percolator and have also followed the discussions in [Sire issue-15](https://github.com/kevinswiber/siren/issues/15). However, I see that no commits has been do…
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Hard to find a title on this one.
The spec mentions a POST for `action=search&query=aaronparecki.com` as a way to search feeds to subscribe on. Together is using this feature to find feeds to subsc…
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[From crux-users]
I've tried searching a triplex-labeled (reductive dimethylated with light (+28)/medium(+32)/heavy(+36) formaldehyde) sample using tide and filtering with percolator. Each "chann…
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In the performance test, the line for Tide with exact p-values followed by Percolator is far below the line for Tide with exact p-values alone. This does not happen for q-ranker, nor does it happen f…
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> Dear team,
>
> I am using Crux Percolator to process MS-GF+ output converted to PIN as per https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3975676/
>
> I am using Crux Percolator rather than the …