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From the tail end of https://github.com/nf-core/eager/issues/382
I suggested that we make a section of the README for things like complementary scripts and tools that are amenable for use with nf-c…
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- [x] Determine if the published SEIR synthetic data model for subsample investigation is useful. Colijn et al. 2023?
- [x] Determine if the LinguaPhylo tool can be used for discrete phylogeography
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We have genomes of DENV-1, DENV-2 and DENV-4 from Colombia and I need to analyze how many and from where were the entries.
Could you please provide to me a dataset with Latin America sequences for …
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Stacks-2.66
https://catchenlab.life.illinois.edu/stacks/
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Following on from #343
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### Summary / Overview
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- 4368d8a6 use a range 0-0.5 for MAF in the GUI
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- [x] [2-4H/3H] use --max-af for ! mafUpper, instead of --min-af
d935c6a8 appl…
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bash simulation_pipeline.sh ../../Data/Gleamviz/seedings.tsv ../../Data/Gleamviz/metadata_cities.tsv ../../FAVITES/run_favites_docker.py ../../Data/FAVITES/flu_spread_config.json simulation_output
Tr…
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**List of Pacakges**
- [x] aliview
- [x] artemis
- [x] bbmap
- [x] beast
- [x] beast2
- [x] canu
- [x] #101
- [x] emboss
- [x] fastqc
- [x] figtree
- [x] gatk
- [x] insight-toolk…
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I believe these files exist and should allow deletion.
```
our job id: 94485
2023-10-23T20:35:02Z REQUEST: get, https://zenodo.org/api/deposit/depositions/7935080
{:params=>{:access_token=>"hidde…
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Please transfer ownership of the below dataset to Deborah Smith (NC State, institutional member).
**ORCID**: 0000-0002-2581-5009
**Email**: debsmith@ku.edu
**DOI**: 10.5061/dryad.xgxd254gx
**Tit…
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# Problem
Maps end at the dateline leading to blank space when scrolling left or right (as shown in the movie below).
https://user-images.githubusercontent.com/29096492/151525313-45a37643-7c94-413…