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import radiomics.featureextractor as FEE
import csv
main_path = r'E:\XX'
ori_name = r'\3.png'
lab1_name = r'\4.png'
para_name = r'\Params.yaml'
ori_path = main_path + ori_name
lab1_path …
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Dear all,
I get this warning if I use a shape of image (208, 156, 1)
Size in specified 2D dimension (0) is greater than 1, cannot calculate 2D shape
when it should work but it considers it a 3d…
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I have an image and a mask (NRRD) with the following spacings.
Image
> sizes: 384 384 195
> space directions: (0.88541668653499994,0,0) (0,0.88541668653499994,0) (0,0,0.90000152587888649)
> spac…
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After voxel-based feature extraction, I only get .nrrd files (feature maps), but, is it possible to get the value of each feature in every single voxel ???
smcch updated
2 years ago
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Hi @JoostJM, I'm new at image feature extraction so I'm exploring some open-source python packages available for it. Calculating GLCM using Pyradiomics and Scikit-Image packages provides different re…
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I wanted to see the extracted parameters by giving the command : print "Extraction parameters:\n\t", extractor.kwargs
But then the above error message shows up after running the code.
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**Is your feature request related to a problem? Please describe.**
As texture features are increasingly being used in medical imaging, it would be nice to have support for same here.
**Describe th…
umgpy updated
3 years ago
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**Describe the bug**
Hi @JoostJM, I will try to keep this as simple as possible. I performed a feature extraction using a CT image and a mask/label map with only a single label (one tumour). I was …
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Hi developers,
I am using Slicer 3D Radiomics extension. After I choose input volume (saved as *.nrrd) and segmentations (saved as *.nrrd), it gives exact same results for each segment. As you can se…
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**Describe the bug**
In Slicer Radiomics after choosing input volume and segmentation and pushing "Apply" button. These errors are encountered:
```
Initializing output table
Starting RadiomicsCL…