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Previous manual submission sheet
https://docs.google.com/spreadsheets/d/1eeFWWwAGgtrrfiWj46GZQcT3bfZMYZGg/edit#gid=1229755840
Hi Tao,
I think I filled out all the information for the followi…
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new client code for snRNA submission needs to be developed.
Requirement:
1. 2 files have to be submitted for snRNA: R1 and R2.
2. Files are identified by their barcode and read number (R1 or R2)
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**Description of the task:**
As a data wrangler I need to ensure the existing datasets are valid with the ingest graph validator to ensure correct data is available in the DCP2 MVP.
This tas…
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Hello,
I am working with a non 10X ATAC dataset, and I was wondering if ArchR is capable of taking the bam files as input?
Thank you!
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Project Title: Transcriptomic classification of human retinal cell types with single-nuclei RNA-seq.Project Short Name: snRNA-seq_for_human_retinaProject UUID: 9c20a245-f2c0-43ae-82c9-2232ec6b594fWran…
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Hi, I completed the metadata fields for GEO datasets GSE114156 and GSE109564 which are both associated with the following publication by Humphreys et al.:
"Single-Cell Transcriptomics of a Human Kidn…
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Project Title: Transcriptomic classification of human retinal cell types with single-nuclei RNA-seq.Project UUID: 9c20a245-f2c0-43ae-82c9-2232ec6b594fWrangler/s: Zinaida,A,Perova; PI/s: Margaret,,DeAn…
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### Which schema needs be changed?
add new fields to existing lib prep module
or
add new module for single nuclei seq fields
The latter may be favoured if the number of fields is >3.
##…
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Currently in the seq schema there is a `molecule` tab that asks for what molecule is sequenced and the examples given are "polyA RNA", "total RNA", "genomic DNA". But where do we capture whether the R…
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User suggests to clarify whether a set of samples is sequencing single cell versus bulk RNA sequencing, since we plan to have non-single cell type data in the future. This will likely be a field on th…