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I am currently working on a high-performance cluster at my university where we utilize the PBS scheduler. I've encountered an issue with my workflow as it was originally designed for use with the Slur…
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Hey STQ Team! First of all, thank you for this great Package! If I can get it to work this will greatly help my work. I recently ran my first PDX Visium Experiment and was trying to run your Nextflow …
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Hello everybody,
How YANK manages the CPU resource in serial mode? , To use all the CPUs do I need to configure MPI ?
Is there some guide on how to configure?, I have installed all the packages b…
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If you have an active AWS support contract, please open a case with AWS Premium Support team using the below documentation to report the issue:
https://docs.aws.amazon.com/awssupport/latest/user/case…
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The current test suite is confusing due to inconsistent naming schemes and a lack of documentation explaining the purpose of each test. To address this issue, we need to:
- Update docstrings for al…
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This project sounds very interesting for the needs of my lab. Unfortunately, opening a port plus having a reverse-proxy running on a machine that submits SLURM jobs is not really an option for me. As …
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Would it be helpful/possible to create a list of key concepts (scheduler agnostic) that should be discussed in the scheduler lesson? Syntax specific to whatever scheduler is being used could then be f…
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**Snakemake version**
`Snakemake 8.16.0`
**Describe the bug**
When running snakemake for a certain period of time, the scheduler gradually becomes lazy. Job finalization, job selectio…
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`run_wizard`'s prototype is a bit confusing. It looks as if you can specify using toolkit by passing in "toolkit" to the `job_scheduler` argument directly, but then later on you see:
```
# Run expe…
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Hey, and thanks for putting this documentation together! It maybe worth bookmarking the link on SWC's #computing channel to make it easily discoverable.
In the "Remote development" section of the …