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I recently ran the pipeline with a transcription factor as the input protein (Q96QS3). Looking at the results, there are not really any high quality hits. Most have TMscores
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_A colleague from the lab made this little sum up of modular transcription based biosensors. It is definitely worth reading and maybe even creating our own version in Portuguese? Why not..._
### Tr…
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https://doi.org/10.1093/bioinformatics/btx480
>MOTIVATION:
An accurate characterization of transcription factor (TF)-DNA affinity landscape is crucial to a quantitative understanding of the molecu…
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From @pgarmiri
https://github.com/geneontology/go-annotation/issues/2941
GO:0070985
transcription factor TFIIK complex
Cellular Component
Definition (GO:0070985 GONUTS page)
A transcrip…
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Hi,
Firstly, thanks so much for making this resource- it is so helpful!
I had two comments/questions:
1) Some transcription factors, like Foxg and, are missing from your list (in that it does…
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Hi, I want to use the S3norm for my ChIP-seq dataset normalization. But before I use it, I want to ask some questions on the usage to clarify:
1. I will run the S3norm in 4 treatments but using the…
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Done when: access by ID, organism, transcription factor, sequence bias
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In
ExprFunc::predictExpr(...) (ExprPredictor.cpp)
we see at least one place where the code assumes that 'cic' will be factor number 2 (0-index, so the third in the factor_expression file.)
This sile…
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GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000413 protein peptidyl-prolyl isomerization
GO:0001932 regulation of protein phosphorylation
GO:0001933 negat…