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I'm training a network on survival curves. The curves cover 20 years, and I'm generating data at 6 month intervals, so my targets are 40 element vectors with each value representing the probability of…
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Updated the current version using
`devtools::install_github(repo = "BioinformaticsFMRP/TCGAbiolinks")`
The following error occurs with TCGAanalyze_SurvivalKM
```
solve.default(vv, temp2) :
Lap…
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### Expected behavior
A question on stackoverflow raised the issue of changing the shape of censored events, e.g. from "+" to "|".
The horizontal bar of the "+" is often not aligned to the line i…
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I'm working on the use of part_surv models for transitions. One thing that needs to be specified to use a part_surv model is the time at which to stop using the Kaplan-Meier estimate and move to usi…
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`base.data.ModelData` is instantiated with a `Model` and handles nulls. Then we don't hear from it for a while, and post-estimation, it handles wrapping of outputs. These responsibilities are unrela…
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10 unit tests/things off the top of my head to check
~~1. I need to remind myself how makeDataList constructs the "time" column when there aren't failures at every time point.~~
The function now h…
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631c0d8 implemented fixes in the wrapper function `fast_glm`, which now allows `speedglm` to be invoked in the various `estimate...` functions as well as in `fluctuateIteratedMean`.
Unfortunately, …
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#Hi!
I'm doing some Survival Analysis and it works fine when I don't put things on a loop, but, when I do, it simply shoes this ValueError I can't solve.
Code is bellow. Thank yo so much!
```…
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This is a placeholder for work to first update and then migrate the `posterior_predict` functions from http://github.com/sambrilleman/rstanjm repo to this fork.
Quoting Sam:
> I think having s…
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I'd like to be able to plot the F(t) rather than S(t) as it is a more informative way at looking at the data in my use case.
It's not clear what the best way of doing this would be with the current A…