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Should be an easy fix but I'm not sure how you want to handle it.
`SiriusAdapter ... -sirius:database custom ...`
(output from Sirius via SiriusAdapter)
SEVERE14:22:17 - Unknown database 'custom'…
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Documentation of the parameters is sometimes very sparse.
Left tolerances only work correctly with negative values! #7040
Isotope errors: You indicate it's a list. But it's not. Seems to be a range…
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Hello
Is there a way to define the neutral loss for variable modifications using `CometAdapter`?
In the Comet documentation ([link](https://comet-ms.sourceforge.net/parameters/parameters_202101…
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**Create a global parameters list**
Terminology between pipelines and shared assets can differ. To help preserve shared content and familiarity between pipelines, subworkflows and modules, it would…
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I noticed that OpenMS misses to correctly group some isotpe and adduct peaks.
This is based on FeatureFindingMetabo and MetaboliteFeatureDeconvolution.
In my opinion, the computation of the overla…
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Defining a templated class with instances specified by wrap-instances in a PXD file does not make the instanced type available for template resolution in another PXD file.
Example:
in file a.pxd:
…
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When trying to execute the first command in the tutorial on Spyder:
`from pyopenms import *
`
This what appears in the console. But if I hover the pointer over it I message pops up: unable to detec…
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in [MSGFPlusAdapter](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/TOPP_MSGFPlusAdapter.html):
> Parameters specified in the configuration file are i…
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https://github.com/OpenMS/OpenMS/actions/runs/9546642799/job/26309975306
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Wrapping of MSExperiment, ConsensusMap, etc. in pyOpenMS leads to very inefficient access.
E.g. calling getSpectra() will copy all spectra as individual python objects.
The question would be how to …