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The goal should be a nice-looking but SIMPLE default plotting approach for plotting ordinations. A `type` parameter could have a default set to "samples", which could be ignored in the ordinations tha…
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`if( !is.null(color) ){ map to size instead of color }`
This allows the `biplot` option to still have a mapped color variable on the plot, instead of the default, which is to shade the samples/specie…
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`plot_taxa_bar()` to conform with other plot naming conventions in phyloseq.
Accessors already included to make it easier to determine the names of sample variables and taxonomic ranks, as well as t…
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Some of the interesting plotting tools create plots that are large, and the current "big" vignette includes too many of these to include within the standard package documentation. A more focused versi…
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Please add a simple example for this function which is complicated.
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It would be nice to see the prompt type next to the prompt id in the drop-downs.
I think this is also related to the larger issue of graying out unsupported prompt types, which I thought we decided …