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Hi,
I noticed that when I create a SequenceCollection of DNASequence() objects and use integers as the id in the DNASequence() constructor, the SequenceCollection.write() method crashes with the foll…
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## Done
- [x] what happens if multiple `BiologicalSequences` with the same `identifier` (fixed: this is explicitly disallowed now)
## Merged (#220)
- [x] write `__str__`
- [x] **BUG**: the `positional…
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See the conversation in #605, [specifically](https://github.com/biocore/scikit-bio/issues/605#issuecomment-51635343)
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Many of the functions in `TreeNode` are sourced direct from cogent and as a result, some could still be cleaned up
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Hello there,
this is my first issue on Github, so forgive me please for my mistakes.
The bug appears when you provide origins or destinations which exceed max URL length provided by Google DistanceMa…
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Since a recent upgrade i am getting the following error (it seems to be caused by widop/http-adapter 1.1.0). Does the DistanceMatrix code need a change as well?
Error message:
Warning: json_decode()…
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I am using Uri to create a [Google Distance Matrix](https://developers.google.com/maps/documentation/distancematrix/) request and i find it a bit awkward since the Google API uses pipe character "|" f…
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Response is displaying origin as destination and destination as origin.
File: ivory-google-map-master/src/Ivory/GoogleMap/Services/DistanceMatrix/DistanceMatrix.php
```
protected function buildDista…
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Results in two test failures stemming from serializing SVGs in `DistanceMatrix`. Recommend upgrading `setup.py` to set the IPython version to 2.0.0
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`skbio.core.distance.DistanceMatrix` and `skbio.parse.record.GengericRecord` have `copy` methods, but do not have the special methods `__copy__` and `__deepcopy__` defined. Would be nice to have these…