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@camarasu, @pascalgirard: when VIP supports version 0.5 of the schema, you could use `bosh publish` to publish as many VIP applications as possible to neurolinks.
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I am trying to perform fiber tracking on a data set and to do that I need to obtain the eigenvectors calculated in DTI computation. Hoping to see if they are saved somewhere, I tried changing the verb…
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### Feature justification
Currently, `sct_dmri_moco` and `sct_fmri_moco` are designed such that the input image is assumed to be in axial orientation (i.e. 3rd dimension is S-I), and the algorithm es…
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The latest beta (20180826) has several changes to handle more-research-lab-type features of GE datasets, but unfortunately fails my test suite on older and more nearly clinical nonEPI GE scans.
The…
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For fmri there is a code to calculate temporal SNR but I could not find one for dmri. I'm hoping use this to adapt the motion correction function on a patient by patient basis in the sct_pipeline.
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In gitlab by @imalone on Jan 25, 2017, 15:42
Running the diffusion pipeline with the updated niftyreg (1.5.13) is crashing at the averaging step, it looks like the command line to run is being genera…
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Segmentation fails in the following datasets under: `duke:/sct_testing/large/`:
All: please add tricky cases and list them below for Charley:
State of SCT: commit 60b9b7c366521f852da20ae17a9bd8f10…
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py.test takes 39 minutes on circle and about 8 minutes on travis.
satra updated
6 years ago
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Following integrity checks should be added:
- [ ] sct_dice_coefficient.py
- [ ] sct_flatten_sagittal.py
- [ ] sct_image.py
- [ ] sct_invert_image.py **--> test created but function not available…
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- [ ] Create a movie that shows all frames in axial orientation