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Would allow edge weighting to be used in edge betweenness method of community detection. For algorithm see Newman, M.E.J. 2004. Analysis of weighted networks. Physical Review E. vol. 70 (2), no5, pp.…
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Hi,
I tried to follow the alpha-SiO2 steps for MgO (one of the examples of phonopy). The input files fc2.hdf5 and fc3.hdf5 were generated using phono3py with dimension for fc2 "2 2 2" and fc3 "1 1 1…
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I don't understand some choices in the ICA calculation process, maybe someone could answer these questions:
1. Why is a so-called pre-whitener (by default channels are divided by their standard dev…
cbrnr updated
6 years ago
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The scipy.sparse.linalg.lobpcg docstring claims largest=True computes the largest eigenvalues.
This does not appear to be true, usually it just returns the same as largest=False but in opposite order.…
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It seems that the `get_eigenmode_coefficients()` function depends on the location of the monitor. I produced a simple example (similar to #380) where I varied the `y` location of a 2D waveguide (y=0, …
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@scottfredericks it might be a good idea to take the advantage of ase for generating molecular crystal.
ASE provides a collection of small molecules which you can use for test.
```python
from ase.…
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Hi dear shankar，
I‘m a beginner and I had some problem when choosing coulomb-truncation-embed ：
I used the comand：
coulomb-interaction Slab 001
coulomb-truncation-embed 0 0 0
but it failed：
Coul…
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Right now, emperor is taking in an otu table for the biplots.
Instead of inputting an otu table and doing the preprocessing in Emperor, I propose the following.
1. Push the biplot preprocessing proce…
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With the attached dataset, there are several things I cannot explain:
* if I run it with the image and label, I get runtime errors in shape feature calculation (no config file, default parameters). H…
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Calling `(dot-eigenvectors ev band-start)` for some set of eigenvectors `ev` appears to effect a change to the computed eigenvectors when `mu_inv` is not null (i.e. when **μ** ≠ **1**, equivalently wh…
thchr updated
6 years ago