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Hi,
running `hicCorrectMatrix diagnostic_plot` I get this error?
```
INFO:hicexplorer.hicCorrectMatrix:Removing 389 zero value bins
INFO:hicmatrix.HiCMatrix:Number of poor regions to remove: 3…
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Hi,
I'm struggling to install HiCAssembler because of compatibility of dependencies. I narrow down the issue and apparently HiCAssembler and HiCExplorer don't get along well because of these packad…
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https://github.com/galaxyproject/galaxy/blob/e9d8c900cb2a6e794b90a99e351c281b71d9123e/lib/galaxy/tools/__init__.py#L2966
There is no real specification on what is and isn't permitted in a collectio…
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Hi, would be great to have a new track type for showing loops on Hi-C data. For example, a bedpe file could be used to plot rectangles (and this could include plotting TADs, if the coordinate pairs ar…
Phlya updated
4 years ago
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Hello!
I am receiving a strange error when attempting to follow the tutorial using [GSE101921](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE101921). When I go to run hicPlotMatrix, I recie…
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I found the picture is different from you example? How did I to correct my Hi-c matrix?
…
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Was trying to `pip2` in a docker. `hicexplorer` broke the call
```
Collecting hic2cool>=0.4 (from hicexplorer>=2.1.1->pyGenomeTracks->-r requirements.txt (line 37))
Downloading https://files.pyth…
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Hi,
I put back my comments which were related to HiCExplorer:
the possibility to plot the normalized count of the matrices (not only log transformed data).
the possibility to auto-width the matrice…
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Hi,
I have recently started using hicExplorer (version 2.2.1.1) and I have encountered an error when using the tool hicPlotTADs. I have tried to use it with several matrixes to make sure that the p…
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![diagnostics_plot](https://user-images.githubusercontent.com/47624012/60716…