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I try to convert a .vcf.gz file to tidy genomic data in Rstudio:
`eu_snps_1 file.exists("strata_eu.tsv")
[1] TRUE`
`> file.exists("UMBELLA_Erumb1_samples_gt_50pct_covered.recode.vcf.gz")
[1] T…
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Hi Thierry,
Could you please check the code of the genomic converter? For some reason, it is failing to generate output files.
Please, find the code I used and the console output. Thanks
> ra…
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The message:
`Error in is.mids(data) : argument "data" is missing, with no default`
I've traced it back to this code block:
```
else if (miPackage[1] == "mice") {
requireNamespa…
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I am trying to combine models trained using flexsurvspline() on different imputations of a dataset with missing data.
I can pass a list of models to the pool() function from the mice package but ge…
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@andersonfrailey and @Amy-Xu, Now that taxdata pull requests #178 (fix TANF values), #185 (use Medicare and Medicaid actuarial values) and #278 (ignore veterans benefits in the distribution of other …
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It seems that love.plot() with abs=FALSE changes the sign of the adjusted (or of the unadjusted) differences. When I have unadjusted and adjusted differences of different signs, they are displayed as …
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Add some examples, with pipes to the documentation.
This should help users not too familiar with pipes to use these.
Example_
tsAirgap %>% na.mean %>% plotNA.imputations(x.withNA = tsAirgap,x.…
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Make new column that explains what sort of info is in the 'photoperiod_day' column of clean BB data...
I made these categories up, change as you see fit!
exp: experimental photoperiod with set day/n…
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I've been getting errors trying to use genomic_converter() and write_colony().
I generated my original .vcf file in ipyrad, and then used PLINK to do some preliminary filtering (removing triallelic l…
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Hello,
I am struggling with a problem which apparently has not been discussed online yet (Stack Overflow etc). Therefore, I would kindly ask if you could have a look at it.
The syntax reads:
…