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### Description
In some systems, the "rm -rf tmp.XX" line crashes even though writing permission is enabled.
The error message is: `rm: cannot remove 'tmp.170921145753': Directory not empty`. Thi…
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I am using workflows.dmri.fsl.artifacts all_fmb_pipeline for dti preprocessing. The output is vol0000_warp_maths_thresh_merged.nii.gz for all subjects. I prefer a more unique name for each subject and…
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### Description
output same as input
compute_dti cannot be run successfully
[dmri_crop_moco.nii.gz](https://github.com/neuropoly/spinalcordtoolbox/files/1452378/dmri_crop_moco.nii.gz)
[bvecs…
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Nipype is not the most pep8-abiding package out there. Maybe this is unavoidable, but I do think in general code that follows these guidelines is something to strive for. Below is a current (7/1/2013)…
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### Description
Keras and tensorflow do not install properly with installation of SCT on Debian (7.11).
### Installer output
Welcome to the SCT installer!
SCT version ......... dev
Instal…
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Hi ...
I'm still struggling with getting to run the Dcm2bids but assuming that I can run it what would be a proper config file for this type of data that attached here? I tried to modify the conf…
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### Summary
Nipype installed from scratch with miniconda from conda-forge fails because networkx changed API and Graphs are missing `in_edges_iter`. See [NetworkX 2.0 announcement](https://networkx…
mvdoc updated
6 years ago
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Hello:
I have a general question for the preprocessing of diffusion, I think right now the pipeline works in sequence, but if I want to parallelize the pipeline and without touching your souce code, …
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new function to show scatter plot of bvecs
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Hello,
I'm running Slicer 4.8 with Mac OS X 10.13.1
I don't see the tool FiberBundleLabelSelect in the menu Diffusion.Tractography.Region-based
I do see the code and the xml in Slicer.app/Conte…