-
From Swarm manual pdf. v1.2.19 released October 3, 2014
Version 1.2.19 fixes a problem related to abundance information when the sequence iden-
tifier includes multiple underscore characters.
No-wher…
-
So I suggest this with some guilt, as implementing ambiguous nucleotides in some of our stuff is a rather fresh and painful memory... but it'd be really cool if `swarm` allowed Ns. I'll have to stick …
-
You may already know about Julia Summer of Code (JSoC) 2015.
This seems to be something like the Google Summer of Code: students develop open source projects under support of their mentor funded by Go…
-
Hello,
Many sequences I analyse are not only composed of A, C, G, T or Us. When there is a nucleotide ambiguity, I can also find R, Y, S, W, K, M, M, D, B, H, V and Ns, and swarm return an error.
Are …
-
Once the first stable release is reached.
-
When upgrading to 59e0d3d167a5bc2c03010df4ed54cc0653b5ae58 from aaf953e1baf9cd65979103c4fda98c0bd48f4759 wifi perormance on both 2.4ghz and 5ghz was severely impacted. Reverting to the previous versi…
-
The server currently has a rather dumb HTTP server based on Python's [http.server.HTTPServer](https://docs.python.org/3/library/http.server.html#module-http.server). This is not a good idea for many r…
-
After conversation with @ethanwhite last night: Right now, there are small sections about a marine biologist named Nelle creating a pipeline in each of the novice/shell lessons. Should these be pulled…
-
Consider a researcher who writes a script against the GA4GH APIs, accesses data and publishes the results. The current APIs do not guarantee that subsequent researchers will get the same result when r…
-
I am running an instance of Riemann that's recieving on the order of 10k events/second. Of those events, each 20% of them is something that I want to coalesce to compute aggregations over. The current…