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**Feature**
Hello,
I would like to merge a new algorithm called *Total spiking probability edges* into elephant.
TSPE enables the classification of excitatory and inhibitory synaptic effects us…
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Any chance to implement some kind of throttling?
Getting a lot of these:
_"429 Client Error: Too Many Requests for url: https://api.tidal.com/v1/search?sessionId=XXX",
'X-Cache': 'Error from clo…
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Dear authors,
Hi! Thanks for the briliant study on the long-standing and crucial problems of understanding the relationship between in-silico validation and experimental outcomes.
I noticed in the […
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Hi,
I am wondering whether there is a way to use a predigested peptide database when conducting close or open search with msfragger?
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Expected behavior
When option scoreOnyl is used, it should return the similarity score which is a floating type.
Actual behavior
With the option scoreOnly on, the score value is -nan and the volum…
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Hi, thanks for your great work again! When I read your codes to implement the in-silico drug perturbaiton discovery, I found an interesting step to perform perturbation:
```
def perturb_condition(…
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Previously we were overwriting custom data on molecule sets when uploading to manifold. Now that we are starting to expect some custom data to be pre-populated, we need to use the `overwrite=False` op…
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[PLACE MANUSCRIPT AND EDITOR DETAILS HERE WHEN AVAILABLE] See step 3
[PLACE PDF URL HERE WHEN AVAILABLE] See step 7
## Step 1. Inform bioRxiv
Who can help: @QueenKraken, @nlisgo, @scottaubrey
- [x…
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hi,
I having a problem reading an ms2 file,
basically, i'm doing this:
```
from pyteomics import ms2
reader = ms2.read(path, use_index=True)
spectrum = reader[0]
```
should that work?
an ex…
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Hi BioC,
Here is a AnnotationHub submission for the Illumina Infinium MethylationEPIC v2.0 kit probe manifest, containing the complete Illumina manifest plus extra columns describing:
- Recommend…