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These are also valid pseudoreactions.
Is there any real distinction between sink and demand reactions? Can we just convert to using one nomenclature? I definitely prefer `DM_` because it is analogous…
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The definition of "ferric iron transmembrane transporter activity" (GO:0015091) is "Catalysis of the transfer of ferric iron (Fe(III) or Fe3+) ions from one side of a membrane to the other." I don't …
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- Loading universal components
1. If KEGG_ID is new, then add a new universal component
2. If KEGG_ID is not new, then add connect to existing universal components
- New column in model_compa…
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We have some evidence that Series 4 may be metabolized by aldehyde oxidase (AO):
http://malaria.ourexperiment.org/biological_data/8464
Can anyone offer to screen some compounds to determine if they …
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For the [Christmas Prototype](https://github.com/Revolutionary-Games/Thrive/issues/milestones), we could really use some models for compound particles. The planned compounds are:
- ATP: Energy, used f…
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I was thinking, I had a conversation with Prof Egen quite awhile ago about the prospect of a communal repository of metabolic models. There was also a discussion as to how it would look.
When Xiaowe…
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So, I've installed the KEGG and MetaCyc databases as models, with their own private databases. However, when I install MetaCyc, I use the KEGG private database thus:
bash ModelDriver.sh importmodel…