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I am also using BRATS dataset containing the images in mha format. Will that not work? I saw in your readme that you have used BRATS 2015 dataset. The folders inside my ./data for a particular patient…
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According to [this](https://lmb.informatik.uni-freiburg.de/Publications/2016/CABR16/cicek16miccai.pdf) paper, they used `IoU` (paper says and I quote : The` IoU` is defined as **true positives/(true …
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I was using MICCAI BRATS 2015 training dataset. I took a list of images and their respective masks.
```python
# f = list of filenames for t2 sequence
im_ar = [sitk.GetArrayFromImage(sitk.ReadImage(…
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When I run this code according to the closed issue,I understand most of the code, But there are too many path and file need to be put into code,I got some confuse.
Then,I run this code,there are some…
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In UnetTraining line151, "model_file = os.path.abspath("3d_unet_model.h5")", where is "3d_unet_model.h5"?
In UnetTraining line 165,"processed_list_file = os.path.abspath("processed_subjects.pkl")",wh…