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### Summary
I tried to set up all nipype required dependencies, and run.
``` python
import nipype
nipype.config.set('logging', 'workflow_level', 'CRITICAL')
nipype.config.set('logging', 'inter…
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Hi!
I have a question about the BIDS-Apps/MRtrix3_connectome Docker. I have organized my dcm images in accordance with the BIDS specification. In my bids_dir I have the sub- folder containing the a…
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Is there any reason not to remove lines 1333-1334 from nilearn/plotting/displays.py?
if not np.allclose(adjacency_matrix, adjacency_matrix.T, rtol=1e-3):
raise ValueError("'adj…
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The MRIQC execution of this dataset (https://openneuro.org/datasets/ds001060/versions/00001) ran out of space for a few subjects:
```
Traceback (most recent call last):
File "/usr/local/minicon…
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### Summary
Hi nipype comunity!
I need your help! :)
I followed the instructions on the developer webpage, meaning I did:
```
pip install -r requirements.txt
sudo python setup.py develop
```…
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Hi,
using heudiconv I realized that for DWI sequences `dcm2niix` doesn't store the field `MultiBandAccelerationFactor`. See nipy/heudiconv#110 for more info.
The information seem to be present in …
mvdoc updated
6 years ago
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This is a feature request to be able to customize at runtime the number of cores nlmeans is using.
**Use case**: We are running a dMRI pipeline on a massively parallel cluster and we need more contro…
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The terminal shows "/usr/local/miniconda/lib/python3.5/site-packages/nipype/workflows/dmri/mrtrix/group_connectivity.py:16: UserWarning: cmp not installed
warnings.warn('cmp not installed')" when I…
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* PyNets version: 0.1.0 (2017-08-23)
* Python version: python3.5 (though 2.7 also installed on server)
* Operating System: Ubuntu 16.04.3 LTS
### Description
PyNets was crashing with both exam…
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UH2 subject s513
```
/usr/local/miniconda/lib/python3.6/site-packages/nipype/workflows/dmri/mrtrix/group_connectivity.py:16: UserWarning: cmp not installed
warnings.warn('cmp not installed')
/…