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Would it be possible to pass arguments from load_pdb, load_file through to the xhr object? I need to pass an authorisation token as a header to the xhr request.
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I am running Xia2 using pipeline 3d. In the command line, I am giving the space group and cell dimensions as well. In the Autoindexing step, Xia2 finds the correct indexing solution, but then gets stu…
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This is the stack trace:
```
opid30@mxhpc2-1705:/data/id30a3/inhouse/opid30a3/20170316/PROCESSED_DATA/trypsin_helical2/autoprocessing_trypsin_helical2_run1_1/XIA2_DIALS/mxoar3-2304_20170316-163746…
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In one console session:
```
Free space: 118823.56 GB
Host: cs04r-sc-com99-01
Contact: xia2.support@gmail.com
XIA2 0.5.280-g98712c6
DIALS 1.dev.1313-g376ec50
CCP4 7.0.035
Command line:…
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CCP4 issue:
> Their dispatchers do not set LIBTBX_DISPATCHER_NAME, which is used in DIALS to identify the origin of log messages.
> If LIBTBX_DISPATCHER_NAME is not set, then all log messages are …
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I think the best idea is to create a simbad-examples repository. Deposit something like TOXD and potentially one or two others which can be used on the website as examples.
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### Command
```bash
$ simbad-contaminant -amore_exe /home/felix/develop/simbad/static/amoreCCB2.exe -nproc 10 toxd.mtz
```
### Partial output
```bash
INFO:Preparing files for AMORE rotation f…
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Get an error which looks like this
```
Traceback (most recent call last):
File "/Applications/ccp4-7.0/lib/py2/site-packages/xia2/command_line/xia2_main.py", line 282, in run
xinfo = xia2_…
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```
Cannot find configuration file: /Applications/ccp4-7.0/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/simbad-0.0.1-py2.7.egg/simbad/static/simbad.ini - terminating...
***…