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Had an error come up in the Parcellate node when using a variant on the mrtrix connectivity workflow.
Exception: File ./ROIv_scale500.nii.gz does not exist.
Interface Parcellate failed to run. Input…
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Two new modules of FiberTractClean and FiberEndPointFromLabelMap were added, with the following tests:
1. With Slicer before removing DMRI with/without ctest cases (passed).
2. With Slicer after remo…
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Getting the following error. Segmentation is loaded, but reference image is not.
![image](https://cloud.githubusercontent.com/assets/10195822/23530615/7d637b46-ff70-11e6-9ae4-53f769342e37.png)
…
che85 updated
7 years ago
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To register t1 and dmri, I would like to know why the two following instructions give me the same result please :
```
sct_register_multimodal -i t1.nii.gz -d b0.nii.gz -identity 1 -x nn -o t1_reg.ni…
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error when bvals are in line instead of column:
```
ValueError: invalid literal for float(): 0 750 750 750 750 750 750 750 750 750 750 750 750 0 750 750 750 750 750 750 750 750 750 750 750 750 0 750 …
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```
Running Sphinx v1.3.5
making output directory...
/home/docs/checkouts/readthedocs.org/user_builds/fmriprep/envs/latest/local/lib/python2.7/site-packages/sklearn/cross_validation.py:44: Deprecat…
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COMMANDLINE:
`````
sct_dmri_moco -i qspace_all.nii.gz -bvec bvecs.bvec -bval bvecs.bvals -bvalmin 1500
`````
BUG:
``
```
Merge DW images...
Average DW images...
sct_maths -i dwi_272.nii -o dw…
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would be useful for registering other contrasts (mt, dmri) directly from the PAM50, instead of using the anat/label/template, which might be lower resolution than the contrast.
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because moco is supposed to output a file called dwi.nii.gz
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data used : /Volumes/folder_shared/sct_issues/20150313_allan
command: sct_dmri_separate_b0_and_dwi -i dmrir.nii.gz -b bvecs.txt -m bvals.txt
Return:
Get dimensions data...
.. 128 x 128 x 12 x 30
…