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In an effort to completely decouple AEGeAn from any non-API GenomeTools code, the code to reset a feature node's source attribute has been removed. I need to work with the GenomeTools developers to di…
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If AEGeAn, and ParsEval in particular, is going to be made available as a shared library, then the code needs better organization. Ideally, the parseval.c program would be pretty minimal, making calls…
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Currently, the ParsEval HTML output has the AEGeAn version number printed at the bottom of each page. This is the desired behavior for stable releases, but for someone who checks out the code with Git…
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For transcripts whose UTRs contain introns, it seems that exons are not inferred properly.
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This project is implemented entirely in C, although it is listed as a JavaScript project because the bundled jQuery and Mootools source code outweighs my own C code. I need to rename the JavaScript fi…