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Hi, I have noticed that when following the instructions (https://combine-lab.github.io/alevin-tutorial/2018/output-format/) for loading binary data it can sometimes be very slow.
I am using the com…
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Hi,
Quick question- if I have the reads for a library spread across multiple files, is it appropriate to run Alevin separately on each file pair and combine with quantmerge, rather than processing …
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First of all thank you for your great tool, which I am using to analyse DropSeq data (barcode length of 12, 100 Million reads). I followed basically the standard protocol, however, further downstream …
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Hi and thank you for helping,
**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
alevin
**Describe the bug**
Running alevin on 10x v1 data results in the foll…
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Hey,
I'm currently trying to use UMI tools at the final stage of my single cell RNA-seq experiment to collapse my UMI reads.
My sequencing was carried out on a NextSeq, which had 4 lanes on the …
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Hi,
I've ran Alevin and generated an alevinQC report. The initial whitelist contains 5261 cells and the final whitelist contains 4340 cells.
filtered_cb_frequency.txt contains 5261 cells and whitel…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
**Describe the bug**
I installed latest version of salmon through git clone for trinityrnaseq. When i run trini…
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Hi team Scanpy,
Thanks for developing this awesome suite of library and above all actively maintaining it.
I found [this](https://scanpy.readthedocs.io/en/stable/tutorials.html) tutorial page very…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
salmon
**Describe the bug**
When loading a pufferfish index using salmon v1.0 I encounter errors. I've posted to…
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Plans to move the Alevin import code to C++, big improvements in speed shown by @k3yavi
Code will probably go into _fishpond_ as it is designed to be a package for Salmon to Bioc methods and utili…