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There will be a new release of the HydroShare API on 6/19. Inspect the results and capture what is different.
Current output:
```bash
$ http --print HhBb https://staging.portal.bigcz.org/ap…
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# Description of the issue
According to the attached publication it should be some strain of Chlamydomonas, see "Metabolic network reconstruction of Chlamydomonas offers insight into light-driven alg…
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label "negative regulation of neuron apoptotic process by negative regulation of transcription from RNA polymerase II promoter"
is getting the inference: SubClassOf: 'positive regulation of neuron ap…
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Using the following PDF as reference....
http://www.nature.com/nature/journal/v486/n7402/pdf/nature11234.pdf
Selecting the abstract text and doing a copy paste into a text editor results in a string…
dwhly updated
8 years ago
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When having fbc:strict="false" in FBC V2 not all flux bounds have to be defined. Cobrapy does not read such models and complains with the following:
```
cobra/io/sbml3.py:246 UserWarning: loading SBM…
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These are also valid pseudoreactions.
Is there any real distinction between sink and demand reactions? Can we just convert to using one nomenclature? I definitely prefer `DM_` because it is analogous…
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The definition of "ferric iron transmembrane transporter activity" (GO:0015091) is "Catalysis of the transfer of ferric iron (Fe(III) or Fe3+) ions from one side of a membrane to the other." I don't …
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- Loading universal components
1. If KEGG_ID is new, then add a new universal component
2. If KEGG_ID is not new, then add connect to existing universal components
- New column in model_compa…
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We have some evidence that Series 4 may be metabolized by aldehyde oxidase (AO):
http://malaria.ourexperiment.org/biological_data/8464
Can anyone offer to screen some compounds to determine if they …
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For the [Christmas Prototype](https://github.com/Revolutionary-Games/Thrive/issues/milestones), we could really use some models for compound particles. The planned compounds are:
- ATP: Energy, used f…