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I am not sure if this is a bug, an intrinsic limitation of the alignment code, or something that I am doing wrong. If I try to align a molecule to itself, with the only difference being the atom order…
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```
import pybel
mA = pybel.readstring("smi", "C(=O)([O-])C(=O)O")
print (mA.write("smi", opt={"I" : True}))
print (mA.write("smi", opt={"U" : True}))
```
I expected this code to print the inchifie…
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Cmake Config is like following:
![screen shot 2015-03-09 at 5 14 26 pm](https://cloud.githubusercontent.com/assets/10948687/6564526/ceb806b4-c67f-11e4-9833-a2e0e3b744ca.png)
![screen shot 2015-03-09 a…
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```
What steps will reproduce the problem?
1. Create a molecule from a SMILES with an aromatic ring in it
2. Convert the molecule to a Pybel molecule
3. Write the molecule to a SMILES string
What is…
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```
Not sure why I thought the BSD was fine. At least license each individual
component under the appropriate license.
```
Original issue reported on code.google.com by `baoille...@gmail.com` on 8…
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Generate a Compound object based on a SMILES string using pybel.
Tricky part appears to be easily installing pybel...
ctk3b updated
9 years ago
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Phycochemical descriptor function; first provide access to basic obprop functionality then add NHA, NHD and NRB via SMARTS as in pybel.
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_Original ticket http://projects.scipy.org/scipy/ticket/1772 on 2012-11-12 by trac user anthonybak, assigned to unknown._
Crossposted to https://sourceforge.net/p/openbabel/bugs/842/ since I'm not su…
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**[Original report](https://bitbucket.org/tdaff/automation/issue/41) by Sean Collins (Bitbucket: [scollins3](https://bitbucket.org/scollins3), ).**
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Running t…
tdaff updated
12 years ago