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Hi, I'd like to try this tool out but am wondering how to format the infernal, cove, or text files properly. It appears that at one point there may have been an Appendix section in the readme, but I'm…
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Develop a minimap2 alignment [see [docs](https://lh3.github.io/minimap2/minimap2.html)] function that uses minimap2 (installed via conda or in the PATH), we can run this so it produces a BAM file. The…
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Hi,
I installed Variant Detective to work on bacterial genomes and found that Claire3 is not working - even with the test dataset.
Any idea what causes this behavior.
I have copied the log below fo…
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The full problem is described below:
Traceback (most recent call last):
File "inference.py", line 158, in
main(args)
File "inference.py", line 55, in main
preprocess_model = CropAn…
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Between pre3 and pre4 of 14_1_0, there is the following change in fillDescriptions-generated cfipython files, for example:
pre3:
```
cat $CMSSW_RELEASE_BASE/cfipython/el8_amd64_gcc12/Alignment/Co…
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Hello,
I was running remora dataset prepare and noticed that my number of chunks was much smaller than expected. I looked at the output file and realized that the extraction procedure appeared to s…
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Hi, I try to register two histology slides (both png files) with wsl and installed the deeperhistreg pip package. When I run code from the jupyter notebook or the bash application 'run_registration.sh…
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Hi. I'm reading the source code of GlowTTS model for educational purposes. One of the sections that I can't really understand is where we try to find the alignment path using Monotonic Alignment Searc…
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The screenshot below shows an example when "Alignment Notes" are included with a mapping. Visibility of the path would be useful to provide additional context for a mapping.
@stuartasutton I may…