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Long Computation Time for addClusters with Multiple Samples
Dear ArchR Development Team,
I am currently using the ArchR package for analyzing my single-cell ATAC-seq data. I have encountered an issu…
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I have been using ArchR for a while now and had got quite far in terms of analysing my data. I have recently started trying to analyse a new dataset and have now got stuck with addDoubletScores. I hav…
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Hello,
Thanks for this great software suite. It's been working great for me so far, except I keep running into the following error when I try to add motif annotations.
**Attach your log file**
…
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Here is my code:
```Python
proj = angr.Project(binary, auto_load_libs=False, use_sim_procedures=True)
cfg = proj.analyses.CFG()
```
`binary`:https://drive.google.com/file/d/110HKM2xAr1KGI…
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Hi I am running unconstrained integration and getting the following error, which seems to stem from the slots/layers ArchR is pulling from the seRNA (Seurat object) input.
`2024-03-14 12:11:53.6736…
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Hi,
I am trying to reproduce the tutorial but get the error "RuntimeError: ./E15_5-S1 is not a pipestance directory".
I note that you have provided the h5 file and image file for all the slices…
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I run the codes in the documents: https://www.archrproject.com/bookdown/per-cell-quality-control.html
```{r}
ArrowFiles
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Hello I am also troubling with the fragment files which are the output of cellranger 10x multiomic data
seurat_atac
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Continuing through after error ggplot for Fragment Size Distribution
Hey team! First of all thank you for everything that you do and the package! @rcorces @jgranja24 @jeffmgranja
**Describe the …
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Hi ArchR developers,
I was trying to subset the archr project for a few samples after QC using subsetArchRProject() and setting dropCells = TRUE. These samples were successfully removed from the s…