-
Previously at https://bioportal.bioontology.org/ontologies/BRO/
-
I want to add complete database from link "https://platform.opentargets.org/downloads" what are the file should i changed to achive this thing. I am using "https://github.com/biocypher/project-templat…
-
I am trying to integrate more categories of Open Targets data (as of now, Biocypher has integrated a few categories). The categories having CHEMBL in their IDs are being processed bu the '\_id' is not…
-
See slack discussion:
> **Gitte Decat** 12:37
> i dont have an option to download different taxon_ids, if i download the all organisms file, it filters on a certain taxon_id that is given! is that…
-
I was going to through the adapter file for open-targets dataset in which I found that the `MouseTargetNodeField` has de-duplication (dropDuplicates()) on rows. On deeper investigation, I found that t…
-
# Biomedical knowledge graphs (BMKGs)
## Examples
As part of a [DeepFunding round 3 project](https://deepfunding.ai/proposal/bringing-network-pharmacology-to-opencog-hyperon), I've created a [re…
-
This import:
https://github.com/GitteDecatBIT/Internship_VIB_2024_GitteDecat/blob/10377e88c2c2285cafcace10aaa289230a79214c/Integration_Of_IRefIndex_In_Biocypher/template_package/adapters/IRefIndex_…
-
These functions seem to be pure (they don't have side-effects; just return a value) but you're ignoring the return value:
https://github.com/GitteDecatBIT/Internship_VIB_2024_GitteDecat/blob/10377e…
-
In [create_knowledge_graph.py](https://github.com/GitteDecatBIT/Internship_VIB_2024_GitteDecat/blob/main/Integration_Of_IRefIndex_In_Biocypher/create_knowledge_graph.py#L67-L73) you download the file …
-
This is a script that drives creation of the knowledge graph. It has a single parameter, the `taxon_id`. This should not be hard coded, you can instead get it from `sys.argv[1]`.
https://github.com…