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Create overview table like the one below for locally ran `LEMS_NML2_Ex9_FN` model.
- [x] run with biosimulators docker locally (on all the different engines)
The resulting minimal omex file SBML…
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Create overview table like the one below for locally ran models (different than the one tested below).
- [x] run directly with tellurium (maybe other options down the line)
- [x] run with biosimul…
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### Contact Details
_No response_
### Location
runBiosimulations
### What happened?
I uploaded
[Figure5.omex.zip](https://github.com/biosimulations/biosimulations/files/10198550/Figure5.omex.zi…
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Filing this here to begin with, but the issue is in jNeuroML/jLEMS.
I have a [channel file](https://github.com/sanjayankur31/ZangEtAl2018/blob/development/NeuroML2/channels/Kv1.channel.nml#L44)
…
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The [Biosimulators_mpbn](https://github.com/colomoto/Biosimulators_mpbn) wrapper for [mpbn](https://mpbn.readthedocs.io) implements algorithms which require new KiSAO terms for algorithms and algorit…
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const maxTime: number = this.formGroup.value.maxTime; // in min
policy is at least SAME_METHOD (always).
policy is at least as lenient as the policy for which the alt algorithm can switch with the m…
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Biosimulators requires an omex file as input, but it does not seem to accept the omex files we created. Why are the omex files not accepted? To figure out why, create a 'minimal' omex file that has th…
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### Simulation tool
---
id: vcell
version: 7.6.0.40
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.6.0.40/biosimulators.json
specificationsPatch:
version: 7.6.0.40…
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---
id: vcell
version: 7.5.0.79
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.5.0.79/biosimulators.json
specificationsPatch:
version: 7.5.0.79
image:
url: ghcr.io…
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---
id: vcell
version: 7.5.0.76
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.5.0.76/biosimulators.json
specificationsPatch:
version: 7.5.0.76
image:
url: ghcr.io…