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Hello I'm unable to Run Haptree for Some Reason, Please if you can reply soon that'll be great because we're working on a publication and will cite HaptreeX if it works.
I try to run the Command :
`…
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Hi,
I had another question. are you guys planning to update your code to take CITE-seq Seurat objects created with Seurat V3 or later?
Thanks,
Andrew
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The isoformDataSample.rda is empty when I download it. Can you make available the isoform x cell count matrix for the Bone marrow mononuclear cell CITE-Seq single-cell data that was generated for the …
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Hello， I am trying to analysis the CITE-seq data using protaccel totally following the 'CITE-seq protein acceleration analysis' in the github.
I got the following error when I ran "[cluster_ID, num…
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Hi,
I wanted to confirm that we are calculating the saturation rate correctly for our CITE-seq data. We have a run_report.yaml output as follows:
Date: 2020-10-29
Running time: 4.0 hours, 43.0 minu…
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Current proposal:
There are only two levels of topics, the main card, and tags within the card
```
- Help (one for each project e.g., Scanpy, Muon, ...)
- Tags = project subpackage or releva…
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Hi, sorry for asking again, but after going through the previous answers I have not found the answer that solves my problem. I have data that contains: HTOs, ADTs, 5' gex and VDJ. I'm trying to use C…
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Hello,
I am testing ADTnorm with only one CITE-seq PBMC sample that has 138 ADTs and ~17K cells. I am using default params. See code below. However, I am getting this error: "Error in lnsrch_morph…
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So I am abusing this tool a bit to look not at CITE-seq barcodes, but at a TRACE-seq barcoding experiment in which my specific experiment has (empirically) about 66,000 barcodes. The result is....slow…
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Hello,
Thanks you for you package !
I'm trying to develop a pipeline of analysis for missionbio multi-omics data. They have something similar to cite-seq but with DNA-seq and protein. So i thoug…