-
- https://github.com/ENCODE-DCC/rna-seq-pipeline
- https://www.genome.gov/sites/default/files/Multimedia/Slides/ENCODE2016-ResearchAppsUsers/ENCODE2016_strattan_slides.pdf
-
A user in [GHelp](https://help.galaxyproject.org/t/no-option-available-to-select-the-reference-genome/7272) requested the hg38 genome in BWA-meth, required for the [DNA Methylation data analysis](http…
-
Hello, I am trying to analyze RRBS data from M. californianus and there is a published scaffold genome that I used in Bismark to get bam and bed files. I want to visualize these against the genome so …
-
Initial group info you provided:
-----------------
| Name | Department/Program | Expertise/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Samantha Sch…
-
**A reproducible template workflow for single-cell DNA methylation data**
DNA methylation is a heritable epigenetic mark that shows a strong correlation with transcriptional activity, and may be de…
-
Hello,
I have some methlyation EPICv2 data that I am trying to perform differential methylation regional (DMR) analysis on, and am having some trouble using the customized packages (specifically t…
-
Hi @iromeo @songqiang @saketkc @egor-dolzhenko
Thanks for this great tool, I find using the sym option of dnmtools useful for making sense of CpG context methylated position, however, I guess it do…
-
https://doi.org/10.5220/0006636401400145
> In the era of precision medicine and cancer genomics, data are being generated so quickly that it is difficult to fully appreciate the extent of what is d…
-
http://doi.org/10.1038/srep19598
-
How do I explain the decision of a neural net trained with multimodal inputs (e.g., a multimodal autoencoder-based classifier trained on different types of genomics data such as gene expression, DNA m…