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A number of factors have made our HHS pipeline fragile in recent months. I made some WIP code to compare what our API had available compared to what was on the healthdata.gov site. Gonna post it here,…
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This might be a known issue, but currently the `geo` metadata is incorrect when round-tripping a partitioned DaskGeoDataFrame.
Some setup:
```python
import json
import geopandas
import dask_g…
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Hi everyone. Great work for the new paper. I'm trying to replicate the results in your joint ATAC-seq and RNA-seq paper. I saw that for the analysis of A549 ATAC-seq, you mention that the procedure wa…
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### Objective: As a user with a pipette, I would like the DCP to process 10x v2 and v3 single-nuclei sequencing data (snRNA-seq) so that I can submit such data to the DCP and view the results in the d…
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We'll build the database and API using an array of tools like ogr2ogr for ETL and FastAPI / pygeoapi for querying. After diving into the use cases a bit more and comparing various approaches, we thin…
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### Version
5.3.0
### Link to Minimal Reproduction
https://echarts.apache.org/examples/zh/editor.html?c=map-usa-projection&version=5.3.0
### Steps to Reproduce
```ts
myChart.showLoading(…
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## Summary
Add better mapping widgets like [OpenLayers](https://openlayers.org/), [Leaflet](https://leafletjs.com/), [Cesium](https://cesium.com/), etc.
## Motivation
The current mapping wi…
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Dump of datasets that may be useful.
- https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE98872
- ~http://bioinf.wehi.edu.au/edgeR/F1000Research2017/ (#4)~
- https://www.ncbi.nlm.nih.gov/geo/qu…
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We already have the [build-configs for CI in the phylogenetic workflow](https://github.com/nextstrain/pathogen-repo-guide/blob/main/phylogenetic/build-configs/ci/config.yaml), so I think reasonable to…
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I have a scenario where I have to build a heirarchical Bayesian model with 46 geos, and the number of records for each geo are different. Is LWMMM modelling mechanism allows to model such datasets ? i…