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I have downloaded and installed soap-hla without error using conda but i have errors when i try to run:
```
$ MHC_autopipeline
syntax error at /opt/conda/envs/soap-hla/bin/MHC_autopipeline line 62…
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- **Workflow changes**
- [x] Sample name as workflow parameter for better output dataset naming
- [x] PEAR
- [x] give percentage along with count
- [x] adapter clipping (Cutadapt)
- [ ]…
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One genotyping vendor types HLA using RT PCR / Taqman approach. It seems similar to SSP, and that can work in this case, but if there are future HML versions maybe we discuss if this is needed.
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Hello, I have a question regarding the embeddings of MHC. I tried the following command
`python3 esm/ecripts/extract.py esm1v_t33_650M_UR90S_1 /path/to/fasta_file.fasta /path/to/pt_files --repr_lay…
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I've created initial implementation for Blackmagic firmware and implemented a basic OpenOCD HLA interface driver for blackmagic probe.
On the probe itself, I've extended the remote.c interface with a…
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Hi Jonassibbesen !
When I used adding_haplotype with AMR population of 1000 genome project, i got this error:
"[vg mpmap] elapsed time 0 s: Executing command: vg mpmap -t 16 -l long -F GAM -x ~…
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_Issue [HLA-1267](https://jira.stsci.edu/browse/HLA-1267) was created on JIRA by [Jennifer Mack](https://jira.stsci.edu/secure/ViewProfile.jspa?name=mack):_
Proposed update to the alignment softwar…
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Hi,
First at all, thank you for this wonderful tool. I have some questions about the files generated by quant function of arcasHLA.
I'm wondering what does significate the results in the quant.l…
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palec nahoru/dolů, nepřesné / nekompletní / matoucí ..., komentář
zabak updated
23 hours ago