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**Submitting author:** @TomKellyGenetics (S. Thomas Kelly)
**Repository:** https://github.com/TomKellyGenetics/graphsim
**Version:** 0.1.2
**Editor:** @majensen
**Reviewers:** @rcannood, @corybrunson
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Hello,
I recently did a single cell ATAC-seq experiment, the facility gave me back a bam file, bed file and a matrix called peak_bc_matrix...mtx, can I start the analysis using the matrix? if so, how…
EDYAC updated
5 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/gevaertlab/AMARETTO
Confirm the following by edit…
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Hello,
I am Lang and want to submit XINA to Bioconductor. I checked XINA by using R CMD Check and Bioccheck and found no warnings and no errors. Of course, I know these are just minimum requirement…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/menggf/DEComplexDisease
Confirm the following by …
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I was wondering if it is possible to get the Greengenes reference sequence ID used to assign taxonomy to the sequence variants inferred by dada2. This information is useful for other pipelines such …
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I'm wondering what data will be the focal point of the curricula? Where should it fall on the spectrum of domain specific to generally applicable to a wide audience?
Data Carpentry and Software Car…
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I think this could be one paragraph, because all of them are describing what we would like to have in an ideal package. Suggested:
> One of the most popular frameworks for interactive analysis is the…
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Hello,
I am analysing 100,000 pair reads from plants on a hp loaded with the most recent version of Ubuntu, and although I can generate an allvall_blast.bln file after approximately four hours, I can…
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> ... the existing data structures (like the excellent ExpressionSet class) and methods are not sufficient
> for scRNA-seq data. An extension to ExpressionSet is desirable to add capabilities specifi…