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I ran snphylo and got the error below: did not have DP information and only recognizing chromosome. Please any suggestion?
snphylo.sh -p 25 -v pcap-test1.vcf
Start to remove low quality data.
Warnin…
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I have plink .bed files (one .bed file for each chromosome) with genotypes for the test SNPs (test_chrN.bed)
I have selected 1000 SNPs to use for random effects modeling.
The genotypes for these 100…
gnarw updated
5 years ago
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执行LD分析时,报错:Error in get_plink_exe() : could not find function "get_plink_exe"。
我想找个报错和没有安装上包FastTraitR_1.0.0有关吧?
报错细节:
```
> # ---去除连锁不平衡的 SNP 并保存
> unclump_snps exposure_data %
+ dplyr::in…
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Good luck!
Requirements
```sh
apt install \
libdbi-perl \
libdbd-mysql-perl \
curl \
zip \
build-essential \
zlib1g-dev \
libmodule-build-perl \
git
```
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I'm happy to contribute some plotting functionality to MendelGWAS. Before that, I think a few design decisions need to be made, especially since the decision here should be consistent across the oth…
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In the subsection of `03_categorize.md` for #297 this came up. I think we need a bit more discussion around the topic to sufficiently resolve this. In the interests of time, I'm creating this issue fo…
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**Describe the bug**
When run multiple times on the same data set, dEploid oscillates between two different answers. For example,
first answer:
```
Effective_K: 1.00005
I…
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Using the same .ini and .pop files as in Issue #40 , it looks like [Haplostats] is including missing data (****) in its haploype estimation.
Here is an example of [Emhaplofreq] results:
```
H…
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I think we still have tools in distribution that would profit from being migrated to the TS. What do others think?
e.g.:
https://github.com/galaxyproject/galaxy/pull/588
Tools in the distributi…