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`chr6 39137946 Minda_116 N . PASS SVLEN=117365;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:113485:0:1:0:1:0,ILL_gridss110bf_1477h,ONT_severus_DUP7080,ONT_ID_67232_2,PB_severus_DUP6128,PB_ID_42826_2,ILL_2…
jzook updated
3 weeks ago
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Bardzo fajny przegląd literatury, może przydać się do opisu drzew jeżeli planujesz je dodać:
http://pages.stat.wisc.edu/~loh/treeprogs/guide/LohISI14.pdf
Tu są ciekawe algorytmy ale nie mają obudowy…
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`chr10 123543388 Minda_14 N . PASS SVLEN=215;SVTYPE=DEL;SUPP_VEC=PB_ID_17547_2,PB_d_43,ONT_d_19,ILL_MantaDEL:175085:0:0:1:0:0,PB_severus_DEL879,ONT_severus_DEL937,ILL_2186766853:2,ILL_gridss180fb_991…
jzook updated
3 weeks ago
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Hi,
Thank you for the nice tool! I am recently using severus for SV calling and was attracted by Wakhan. However, when I tried to run it on my Pacbio data, an error was reported.
The error is:
`…
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### Description
Clinicians need to be able to detect LoH and CNV in TGA cases. Currently a CNV report is produced which contains diagrams and tables for CNVs and LoH, CNVs are also in the SV VCF file…
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`chr10 93279155 Minda_12 N . PASS SVLEN=1443432;SVTYPE=DUP;SUPP_VEC=PB_severus_DUP827,PB_r_49,ONT_severus_DUP880,ONT_r_32,ILL_MantaDUP:TANDEM:172346:0:1:0:0:0,PB_ID_18116_2,ILL_1079034284:2,ILL_grids…
jzook updated
2 weeks ago
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In particular we need to address the
- allocation budget and
- hard limit behavior.
Currently POH uses same tuning.
As was mentioned in PR review for https://github.com/dotnet/runtime/pull/3…
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`chr7 154017977 Minda_138 N . PASS SVLEN=164;SVTYPE=DEL;SUPP_VEC=PB_d_428,ONT_d_198,PB_severus_DEL6934,ONT_severus_DEL8000
`
https://v2.genomeribbon.com/?session=https://42basepairs.com/download/s3/…
jzook updated
2 weeks ago