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We currently have a bug where when the cholesky is defining itself in sampling mode, and when it is a representation of something.
At the moment in order to deal with / delay the bugs in #593, #594…
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e.g.
```
require(tergm)
set.seed(0)
nw
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How to solve the BouOwen model based on displacement input
![17668431efcf995803f6d65a2497f70e](https://github.com/diegoandresalvarez/BWBN_TMCMC/assets/122767137/5229ffa4-c62e-4daf-9b84-c28697f6b2ce)…
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This came from : https://github.com/stan-dev/stan/wiki/Stan-Best-Practices/
It should be included in the user's guide in some form merged with what's there now about Stan progams as software.
On…
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Keywords: Disease Ecology, Markov Chain Monte Carlo (MCMC), Partially Observed Markov Processes (POMP), Non-negative Binomial Distribution, Forecasting, West Nile Virus (WNV).
Developing models to …
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It is known that in a system based on Monte Carlo sampling, the results depend on the initial random seed. To my understanding, the RBeast package has this characteristic. However, the results are var…
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This is the current helpstring for MCMCThreads
```
help?> MCMCThreads
search: MCMCThreads
MCMCThreads
The MCMCThreads algorithm allows users to sample MCMC chains in parallel using
m…
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#### Summary:
The step size adaptation targets a suboptimal "acceptance statistic".
#### Description:
About two and half years ago issue #2789 pointed out a problem with the calculation of th…
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First issue I've done in my whole life
Edit: first line of code was not visible because I don't knon Markdown
This code simulates a continuous time Markov chain (CTMC) given some transition probab…
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Dear GONE team,
I followed the GONE tutorial to infer recent demographic history of a Drosophila species which has no empirical recombination rates estimates by using experimental methods. Thus, th…