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How to merge the DMR within 100bp or other size?
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Hello again,
I'm running into an issue when running QC and assembly below:
```
09/11/2023 06:29:54 PM INFO: Command - /Accounts/gkanaan/.conda/envs/binning/bin/aviary assemble -w flye_assembly --…
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**Describe the bug**
When GoldenDict tries to index this very large (12G) dictionary, it fails after ~30 mins with error message:
```
"Slob dictionary initializing failed: /home/jrpear/Blobs/enwiki…
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#### Which new datasets are being added with this release?
#### What is the sample breakdown (number of WGS, WXS, RNA-Seq, Panel, Methylation, other)?
#### What module(s) generated any new files…
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I am transferring part of a discussion from SourceForge to GitHub.
So, I hope it is OK that I am copying the following content, and I will post responses as an individual (truely myself)
## Copi…
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Hello Sir,
I am checking the conversion efficiency of the spike-in control used (puC19). Kit used is NEBNext Enzymatic methyl seq kit.
Below are the commands I have used for analysis.
Before thes…
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Arises from liaison activity with Stanford center, as tracked in Jira: https://sagebionetworks.jira.com/browse/HSD-83
RFC doc: https://docs.google.com/document/d/1c1ndcijihkS4eaXfRHbCjisDnhiqEuoDfE…
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### Operating System
Windows 10
### Other Linux
_No response_
### Workflow Version
v1.6.1
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
nextflow r…
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#### What are the scientific goals of the analysis?
Create condensed methylation analysis tables for either display or available for download on the MTP portal.
#### What methods do you pl…