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- [ ] A tutorial on DeepChem dataloaders and how a DataLoader can be used to load in a new dataset
- [ ] A tutorial on deep microscopy, focusing on cell counting and cell segmentation
- [x] A tuto…
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Instead of implementing ES logic externally we prefer to use GROMACS to do this. This should reduce bugginess, instability and complexity.
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Dear Molly developers,
I have been working on ion implantation simulation for a while and want to develop some new algorithms to deal with the microscopic collisions. Then I came across `Molly.jl`,…
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Dear developers,
I am working on a project which conducts Monte-Carlo + molecular dynamics simulation. In the MC part, the energy difference before and after a proposed move is required. However, …
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Opened issue to list here other Python libraries to be checked.
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Provide trainings with details about the algorithms of the main analysis to help user really understand what is happening .
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Hi. It's a great project. I am new here. I notice that there is no pdb file in your example. So, I want to know whether it can creat a ramachandran plots from pdb. If it can, please give a example.
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1 - Plotting free energy estimation seems to me a huge deltaG(target temp=302K), ~5000. Is it as a result from method or is it just a statistical estimation?
2 - I couldn't to reproduce the PMF g…
wever updated
7 years ago
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Implement the accumulation for force and energy using fixed precision - this way the current flavors of atomicAdd_x_y functions from vectype_ops.clh could drop the costly while loop in favor of existi…