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I've tried this on two different systems (cluster and desktop) now. I'm finding that Yank hangs when creating the _second_ cached context object. Have you seen anything like this before?
```
[kyleb…
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+ Buat peta topik riset bidang yang akan ditekuni dan sebaiknya lebih dari tiga sehingga dapat dicari irisannya.
+ Gunakan fitur [Mindmap dari Mermaid](https://mermaid.js.org/syntax/mindmap.html) unt…
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Hi all,
We(@amcadmus, @njzjz, @TablewareBox, @Dead-fisher) want to contribute our new features to PLUMED2, which can read TensorFlow graph files and use their outputs as biased force adding to the si…
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Hi,
First of all, great add-on! I've been playing with it for my molecular dynamics simulations and it works great event data uploaded is heavy (using Blender 3.2). I have several objects and one mtl…
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**Summary**
I would like to suggest the creation of a new compute command which calculates the virial-velocity correlation function. It should be possible to implement it by modifying the compute v…
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Simulated Solute Tempering, 2009
Robert Denschlag, Martin Lingenheil, Paul Tavan, and Gerald Mathias*
https://pubs.acs.org/doi/10.1021/ct900274n
Molecular Simulations of Mixed Lipid Bilayers with…
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@mastrof, maybe we can discuss what you commented in this post: https://github.com/JuliaDynamics/Agents.jl/issues/884#issuecomment-1732556853
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I'm working at Vashishta's group and I showed them some benchmarks of `user-reaxc` on KOKKOS CUDA. On a 6 million atom system, `fix qeq` is ~75% of computation time (performed every step). One of the …
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Hi, I am interested in using radical.pilot and it seems to work well for my purposes when it comes to running multiple independent Molecular Dynamics (MD) simulations on one node, within one HPC job. …
dz24 updated
18 hours ago
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## Is your feature request related to a problem? ##
I am doing molecular dynamics simulations in VASP and would like to use MDAnalysis to analyze the trajectories.
## Describe the solution y…